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BIOLOGICAL MITIGATION OVERVIEW / Monitoring Subjects Overview


Birds

General Construction Monitoring:

The Final Environmental Impact Statement (FEIS) and/or the regulatory permits for the project require monitoring for five species of birds that could potentially be adversely affected during construction:

  • California least tern
  • California brown pelican
  • American peregrine falcon
  • Double-crested cormorant
  • Western gull

These species will be monitored during pile-driving, dredging, and other construction activities that are in or adjacent to the Bay or that may affect their nesting success. The frequency and duration of each monitoring visit will vary depending on the bird species, the time of year, and the construction activity taking place (see the Bird Monitoring and Management Plan (pdf - 476 KB) for more details).

Peregrine Falcon Nest Monitoring:

The peregrine falcon nest(s) on the existing East Span will be monitored during the nesting season to assess the potential effects on this species from construction activities. The nest monitoring will be carried out from an observation point(s) that provides a good view of the nest site(s). The frequency and duration of the monitoring visits will vary depending on the time of year, the construction activities taking place, and the likelihood of disturbing the nesting activities of the peregrine falcons. The bird monitors will assess whether construction activities are disturbing the nesting activities to the point that the pair may abandon the nest. If so, the eggs will be collected and/or any chicks will be captured and released to an appropriate off-site location by biologists who have the appropriate expertise and authorizations.

Nest Surveys on Yerba Buena Island:

Bird monitors will conduct nest searches, prior to vegetation removal on Yerba Buena Island (YBI), for all bird species protected under the Migratory Bird Treaty Act. These include five species of concern that were identified in the FEIS as possibly nesting on YBI:

  • Black-crowned night heron
  • White-tailed kite
  • Allen's hummingbird
  • Bank swallow
  • Bewick's wren

Nest searches will be conducted prior to each construction activity that will require vegetation removal on YBI during the breeding season of any of the target species. The breeding seasons vary, but one or more of these species may be nesting between January and July. The surveys will take place no earlier than two weeks before the start of vegetation removal. This will help to ensure that no nesting activity begins in the intervening period between a survey and the actual work. To confirm the presence or absence of breeding, the observer will survey the site once. To determine nest locations if breeding may be present, up to two more surveys may be conducted on different days.

Monitoring During Dismantling of the Existing Bridge:

Prior to beginning dismantling of the existing East Span, Caltrans will explore the possibility of timing the dismantling activities to minimize disturbance of nesting by peregrine falcons, double-crested cormorants, and western gulls (e.g., by scheduling dismantling activities in the vicinity of known nest-sites outside of the breeding season).

During the dismantling work, cormorants and gulls will be prevented from nesting on portions of the existing bridge by regularly washing partially constructed nests off the bridge with water when the nests are actively occupied. If the nests are completed and the birds have laid eggs, the nests will not be disturbed.

Bird monitors will assess whether construction activities are disturbing the nesting activities of peregrine falcons to the point that the pair may abandon the nest. If so, the eggs will be collected and/or any chicks will be captured and released to an off-site location by biologists who have the appropriate expertise and authorization.

Shorebird Roosting Mitigation

Caltrans will mitigate for potential impacts on shorebird roosting habitat at the Oakland Touchdown by creating a permanent shorebird roosting site north of the Oakland Touchdown. The roosting site will be about 500 square feet. Following construction of the roosting site, bird monitors will conduct surveys to determine the extent to which shorebirds use the site. Surveys will be carried out monthly from September through April for three years.

Reporting:

Bird monitoring memos will be posted weekly in the report section of the website. Nest survey results will be posted after completion of each one- to three-day survey. Shorebird roost monitoring memos will be posted after completion of each survey (view Bird reports).

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Fish

A fisheries monitoring program has been developed to assess impacts on fisheries and to in evaluate the performance of a bubble curtain (see schematic for details) in minimizing the level of incidental take of special-status fish species (see the Fisheries and Hydroacoustic Monitoring Program Workplan (pdf - 4.34 MB) for more details). Fisheries monitoring will be conducted during construction of the eastbound structure (Piers E6 through E3). It is expected that the location of pile-driving for the westbound structure will be essentially the same and impacts to fish would be similar to those documented for the eastbound structure; therefore, monitoring during construction of the westbound structure is not currently planned.

The monitoring program will include:

  • Hydroacoustic monitoring using hydrophones to document sound pressure levels.
  • Monitoring for predation by gulls to be used as a qualitative index of mortality caused by pile-driving.
  • Caged fish monitoring using shiner surfperch and steelhead of various sizes to evaluate the mortality and injury rate for differing sizes and species of fish that have swim bladders.

In addition, construction activities that occur during the peak herring spawning season, generally January to March, will be monitored by a qualified biologist to determine the presence of spawning herring. If spawning is observed in the construction area, in-water construction activities, such as pile-driving and dredging will be suspended within 660 feet of the observed spawn. In-water construction activities would not resume at that location for a period of up to 14 days, allowing herring eggs to hatch and larvae to disperse.

Reporting:

During periods of monitoring, fish monitoring memos will be posted weekly in the report section of the website. After the fisheries monitoring is completed (estimated Summer 2004), a report summarizing the results will be posted (view Fish reports).

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Eelgrass

 
Eelgrass bed locations
 

Eelgrass beds occur in some of the shallow intertidal areas at the Oakland Touchdown and at Clipper Cove at Yerba Buena Island. Eelgrass provides important nursery habitat and protection for many fish. In addition, avian species are often observed foraging in the beds.

Construction of the East Span Project will impact eelgrass beds with the dredging of a barge access channel in a portion of the shallow Emeryville Flats. The work will result in the permanent and temporary loss of approximately 3.60 acres of eelgrass (3.24 acres of permanent impacts and 0.36 acres of temporary impacts)

While not all of the impacts to eelgrass can be mitigated on-site (see Off-site Mitigation), the restoration of portions of the barge access channel to its pre-construction bathymetry could result in approximately 1.73 acres of eelgrass within the project footprint. Caltrans is currently evaluating a variety of issues related to restoration before developing and implementing a restoration program.

Some of the efforts include:

  • Caltrans is conducting annual eelgrass surveys to assess the status of eelgrass within the project area to evaluate and minimize project impacts and develop appropriate restoration methodologies.
  • Caltrans has harvested and transplanted approximately 0.55 acres of the eelgrass found in the footprint of the barge access channel into an area of the Emeryville Flats and Brickyard Cove. The purpose of this transplant effort is to conduct a rigorous investigation of factors supporting transplanted eelgrass growth and survival in San Francisco Bay.
  • Caltrans will provide $1 million to research eelgrass beds in San Francisco Bay. In partnership with the National Marine Fisheries Service, Caltrans will survey eelgrass within San Francisco Bay to better understand its distribution and density, prepare a limiting factors analysis and identify appropriate restoration methodologies. The information will assist Caltrans and resource and regulatory agencies in protecting and managing eelgrass in San Francisco Bay.

Reporting:

There will be a variety of eelgrass related reports produced. Annual eelgrass surveys will be posted annually (in December) in the report section of the website. Other documents will be posted as they become available (view Eelgrass reports).

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Marine Mammal

Marine mammals (California sea lions, Pacific harbor seals, and gray whales) will be monitored while pile-driving occurs without cofferdams. This type of pile-driving has the potential to harass these species swimming, foraging, or resting in the project vicinity.

Prior to commencement of driving of any in-water, permanent pile without a cofferdam, a preliminary 1,640-foot radius safety zone for harbor seals and California sea lions will be established around the pile-driving site. Observers will begin monitoring at least 30 minutes prior to startup of the pile-driving. Observers will likely conduct the monitoring from small boats, existing bridge piers or construction barges. Pile-driving will be delayed if any marine mammals are observed in the safety zone prior to the start of pile-driving. Once driving a pile segment begins, operations will continue uninterrupted until the segment has reached its predetermined depth. Monitoring will continue through the pile-driving period and will end approximately 30 minutes after pile-driving has been completed.

Data collection will consist of a count of all marine mammals by species, behavior, sex and age class if possible, location, direction of movement, type of construction occurring, time that pile driving begins and ends, any acoustic or visual disturbance and time of the observation. (see the Marine Mammal Monitoring Plan (pdf -1.71MB) for more details)

Reporting:

During periods of monitoring, marine mammal monitoring memos will be posted weekly in the report section of the website. At the end of each major phase of construction in which pile-driving occurs, a summary report will also be posted (view Marine Mammal reports).

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Water Quality

Under the Waste Discharge Requirements (WDRs) for the East Span Project, Caltrans is required to conduct turbidity monitoring and reporting activities according to a Self-Monitoring Program (SMP) during dredging and fill activities (see California Regional Water Quality Control Board Order R2-2002-0011 (pdf -806KB) for more details). Caltrans is required to prevent increases of turbidity and chemicals of concern in amounts greater than those specified in the WDRs to protect eelgrass beds located adjacent to the project area that have been designated as an Environmentally Sensitive Area (ESA).

Sampling is conducted every two hours during active construction. If an exceedance is observed, another sample is taken 15 minutes later to confirm the exceedance. If the exceedance is still present, hourly monitoring will continue for 4 hours. If the exceedance still exists after 4 hours, the following procedures will be followed.

If turbidity standards are exceeded and it is determined that the exceedance posed a potential threat to the ESA for any of the following:

  • A continuous period of four hours or more
  • Eight hours or more in any one-week period from Oct. 1 - Mar. 31
  • Sixteen hours or more in any one-week period from Apr. 1 - Sept. 30

Caltrans will then suspend all dredging, excavation or fill work causing or contributing to the exceedance, until turbidity levels have fallen below exceedance levels and remained there for a minimum of four consecutive hours. Additionally, Caltrans will implement control measures necessary to prevent a recurrence of the exceedance when work is resumed and will immediately notify the Regional Water Quality Control Board (RWQCB) of the exceedance and how it will be corrected.

If turbidity standards are exceeded and it is determined that the exceedance posed a potential threat to the ESA for either of the following:

  • Twelve hours or more in any one-week period from Oct. 1 - Mar. 31
  • Twenty-four hours or more in any one-week period from Apr. 1 - Sept. 30

Caltrans will then halt the dredging, excavation, or fill causing the exceedance, until the cause of the violation is found and sampling has demonstrated that the exceedance has been corrected or when Caltrans had provided the RWQCB with a corrective action plan that provides alternative methods of compliance. Caltrans will immediately notify the RWQCB of the exceedance and how it will be corrected.

Reporting:

Water quality reports will be posted monthly in the report section of the website (view Water Quality reports).

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Off-Site Mitigation

 
off-site mitigation locations
 


Impacts to special aquatic sites resulting from construction of the new East Span will be mitigated by creating and enhancing habitat off-site. An interagency effort is underway to evaluate several mitigation programs including the North Bay Mitigation Program at Naval Security Group Activity (NSGA) - Skaggs Island, the Central Bay Mitigation Program at the Eastshore State Park, the San Francisco Bay Eelgrass Research Project (see Eelgrass for more details), and the San Francisco Bay Salmonid Habitat Restoration Program.

Caltrans will provide up to $8 million to remove hazardous materials and infrastructure at NSGA-Skaggs Island in the North Bay. In partnership with U.S. Fish and Wildlife Service, Caltrans will remove and remediate hazardous materials, such as lead-based paint and asbestos containing materials, and demolish and dispose of the intrastructure. This will facilitate the transfer of approximately 3,300 acres of diked historic baylands at NSGA-Skaggs Island from the Navy to the U.S. Fish and Wildlife Service. The U.S. Fish and Wildlife Service will then prepare a restoration plan for the site. Once restored, Skaggs Island could provide potential habitat for endangered species including clapper rails, least terns, and salt marsh harvest mice.

Central Bay Mitigation flow chart

Caltrans will provide $2.5 million towards the creation and restoration of eelgrass, sand flats, and wetlands at the Eastshore State Park in the Central Bay. The Central Bay provides potential near-project mitigation opportunities at Radio Beach, Brickyard Cove, North Basin, and Hoffman Marsh. Caltrans, in partnership with the East Bay Regional Park District, will evaluate, select, and implement habitat improvements at up to four of the Central Bay sites listed. Once implemented, the selected sites will be monitored for success.

Caltrans will also provide $3.5 million to the National Marine Fisheries Service for the restoration of federal- and state-listed salmon habitat tributary to the Central and South Bay. These funds will be used to develop a grants program that supports fishery projects that improve the ability of steelhead and salmon to migrate upstream to spawn.

Caltrans has transferred the funds to the National Fish and Wildlife Foundation, who will administer the program, but spending of the funds will be at the discretion of NOAA and CDFG, in consultation with Caltrans and FHWA.  Grant monies were awarded in excess of $2,178,000 to eleven projects as part of the 2005 Request for Proposals. (View the 2005 Annual Statement)

Reporting:

Reports and workplans will be posted in the report section of the website as they become available (view Off-Site Mitigation reports).

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Dredged Material Disposal and Reuse

Dredging in-Bay is required to provide barge access during construction of the new bridge and dismantling of the existing bridge as well as for pier construction. Dredged material will be transported from the construction site for disposal or beneficial reuse.

It is Caltrans' goal to beneficially reuse dredged materials at upland wetland restoration sites or other beneficial reuses such as levee protection, if such sites are available and are cost-effective. However, some dredged materials will be disposed of at approved in-Bay or deep ocean disposal sites. Caltrans may also opt to beneficially reuse dredged materials at landfill sites as daily cover.

Dredging for the barge access channel occurred July to October 2002. The majority of this dredged material was disposed of at the Deep Ocean Disposal Site (DODS), west of the Farallon Islands. A small amount (approximately one percent) of the dredged material was determined to be unsuitable for aquatic disposal and was beneficially used for levee protection as part of the Winter Island Levee Restoration Project.

Small amounts of material are currently being generated during pier construction. This material is being disposed of at the Alcatraz in-Bay site due to the logistics of transporting and disposing of small monthly loads.

Disposal of material at the DODS requires monitoring of shorebirds and marine mammals. Observers are to be present on at least one disposal trip during each calendar month that disposal occurs, and on average at least once every 25 vessel trips to the DODS.

Reporting:

DODS Seabird and Marine Mammal Monitoring Reports will be posted in the report section of the website following each month in which disposal at DODS has occurred (view Dredged Material reports).

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